Basic Information
Locus ID:
gene_3336
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 45680035 | 45684657 | - | gene_3336 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.33 | 31,752.43 Da | 50.10 | 59.69 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 170 | 238 | 4.59614E-32 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 172 | 238 | 1.3E-9 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 152 | 241 | 3.09E-13 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 166 | 250 | 1.6E-15 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 171 | 249 | 1.3E-6 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 170 | 244 | 9.967915 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 55 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21320.2 | nucleotide binding;nucleic acid binding. | 0 |
| RefSeq | XP_010671380.1 | RNA-binding protein 1 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8H0P8 | RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C8YBP9 | RRM domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology