Basic Information
Locus ID:
gene_3301
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 45127772 | 45131699 | - | gene_3301 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.64 | 33,031.30 Da | 57.91 | 87.61 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 17 | 57 | 3.7E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 10 | 75 | 4.58E-15 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 10 | 59 | 1.1E-8 | - |
| SMART | SM00256 | fbox_2 | 20 | 60 | 5.3E-9 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 14 | 59 | 11.325583 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12855.1 | F-box family protein. | 0 |
| RefSeq | XP_028793302.1 | F-box/kelch-repeat protein At3g17530-like [Prosopis alba] | 0 |
| Q9LPW4 | Putative F-box protein At1g12855 OS=Arabidopsis thaliana OX=3702 GN=At1g12855 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8T1PUL5 | F-box domain-containing protein OS=Carya illinoinensis OX=32201 GN=CIPAW_07G037600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 11 | gene_16218, gene_16226, gene_2540, gene_2541, gene_2830 ... |
| Amaranthaceae | Atriplex hortensis | 8 | Ah007104, Ah007689, Ah007690, Ah018643, Ah021126, Ah021127 ... |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg15003, Sbi_jg15004, Sbi_jg15099, Sbi_jg29991 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg26326, Seu_jg28588 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00020049, GOSA_00020050, GOSA_00020051 |
| Amaranthaceae | Suaeda glauca | 10 | Sgl01365, Sgl01366, Sgl06440, Sgl06519, Sgl06520, Sgl12989 ... |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000000314, gene:ENSEOMG00000003057 ... |
| Amaranthaceae | Chenopodium quinoa | 10 | CQ.Regalona.r1.2AG0015500, CQ.Regalona.r1.2AG0015510 ... |