Basic Information
Locus ID:
gene_3294
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 44967921 | 44970835 | - | gene_3294 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 44,876.59 Da | 49.80 | 81.72 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 362 | 409 | 9.1E-11 | IPR001841 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 16 | 84 | 6.5E-14 | IPR025287 |
| SUPERFAMILY | SSF57850 | RING/U-box | 362 | 412 | 7.07E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 346 | 414 | 1.7E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 363 | 408 | 2.6E-6 | IPR001841 |
| SMART | SM00744 | ringv_2 | 362 | 409 | 0.0041 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 363 | 409 | 12.533537 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021843073.1 | putative RING-H2 finger protein ATL21B [Spinacia oleracea] | 0 |
| Q9SKK8 | RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C9DHU7 | GUB_WAK_bind domain-containing protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology