Basic Information
Locus ID:
gene_3293
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Zinc finger (C3HC4-type RING finger) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 44958682 | 44959907 | - | gene_3293 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 38,855.06 Da | 48.71 | 83.07 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 294 | 338 | 6.2E-11 | IPR001841 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 31 | 97 | 1.5E-11 | IPR025287 |
| SUPERFAMILY | SSF57850 | RING/U-box | 288 | 341 | 3.79E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 253 | 342 | 6.5E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 296 | 337 | 9.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 296 | 338 | 10.33534 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07040.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021761639.1 | putative RING-H2 finger protein ATL21A [Chenopodium quinoa] | 0 |
| Q9FL42 | Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1 | 0 | |
| TrEMBL | A0A7C9CJG6 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology