Basic Information
Locus ID:
gene_3261
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
ATPase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 44325985 | 44333456 | - | gene_3261 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 92,407.73 Da | 40.98 | 86.80 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 548 | 681 | 5.65353E-25 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 550 | 680 | 2.1E-38 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 702 | 745 | 1.7E-10 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 510 | 756 | 1.32E-58 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 682 | 760 | 1.2E-94 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 509 | 681 | 1.2E-94 | IPR027417 |
| SMART | SM00382 | AAA_5 | 546 | 683 | 4.7E-21 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 653 | 672 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 743 | 777 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 443 | 473 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 743 | 780 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 443 | 484 | - | - |
| Coils | Coil | Coil | 733 | 754 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52882.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_021764986.1 | putative cell division cycle ATPase [Chenopodium quinoa] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A803M029 | AAA domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology