Basic Information
Locus ID:
gene_3244
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Glutaminyl-peptide
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 44073605 | 44084823 | - | gene_3244 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 71,289.64 Da | 37.77 | 89.65 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05096 | Glutamine cyclotransferase | 73 | 309 | 3.4E-89 | IPR007788 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 411 | 605 | 2.8E-11 | IPR001245 |
| SUPERFAMILY | SSF63825 | YWTD domain | 117 | 308 | 2.88E-15 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 361 | 613 | 1.35E-31 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 420 | 618 | 4.2E-37 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 261 | 614 | 19.340271 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25720.1 | glutaminyl cyclase. This locus encodes a protein with similarity to gamma-glutamylcyclotransferase that may be involved in catalyzing the formation of pyroglutate residue on proteins that have been post-translationally processed to reveal a glutamine at their N-terminus. Enzymatic assays to test the function of this protein were performed using a truncated form of the protein lacking a signal peptide that is most similar to the AT4G25720.1 protein model. | 0 |
| RefSeq | XP_021844212.1 | glutaminyl-peptide cyclotransferase [Spinacia oleracea] | 0 |
| Q84WV9 | Glutaminyl-peptide cyclotransferase OS=Arabidopsis thaliana OX=3702 GN=QCT PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P5CAZ4 | Glutamine cyclotransferase OS=Parasponia andersonii OX=3476 GN=PanWU01x14_168010 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg12311, jg13949, jg2257, jg2259, jg6605 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_3244, gene_7144 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah009052, Ah018811 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_3g053360, BVRB_4g090300, BVRB_4g090320 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg38454, Sbi_jg6564 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15358 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006457 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01890, Sgl07068 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000002704, gene:ENSEOMG00000028900 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.2BG0001220, CQ.Regalona.r1.3AG0003610 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30183520, pistato.v30183550 |
| Apiaceae | Apium graveolens | 2 | Ag10G02586, Ag4G02893 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G002410 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712433 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1630.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G16670, Ftri4G29503 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G25720.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025771m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g23750.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g011630.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1484 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1575 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g02430 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0407s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g03660 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2783 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00010476, Pov_00041022 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G21083 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.25, BH06.20, CH06.18 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_6AG0505600, gene-QOZ80_6AG0505610 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0312400.1, HORVU.MOREX.r3.7HG0638390.1 |
| Poaceae | Oryza coarctata | 2 | Oco11G000200, Oco12G000160 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g01410.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G002000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0404100 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr0G007500, Chr0G007510, Chr0G023410, Chr0G023420 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel3E01G699200, Tel3E01G699400, Tel3E01G699500 ... |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC3AG062640, gene_TRIDC4AG067650 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS3A02G442900.1, TraesCS3D02G435400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb268480_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-51239, nbis-gene-51240 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g31206, Zma_g31207, Zma_g31208 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.1436, evm.TU.LG06.1900, evm.TU.LG14.718 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g06870 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.87 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29251 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10283 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2191 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.53 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001036 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2332 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6309 |
| Salicaceae | Populus euphratica | 4 | populus_peu09798, populus_peu09799, populus_peu24665 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132631967, gene-LOC132631969 |
| Solanaceae | Solanum chilense | 1 | SOLCI007306400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107012228, gene-LOC107012501 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.18731_chr07_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G1544 |
| Zosteraceae | Zostera marina | 2 | Zosma02g14670.v3.1, Zosma06g05280.v3.1 |