Basic Information
Locus ID:
gene_3213
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Organic cation carnitine transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 83340472 | 83345394 | + | gene_3213 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 38,534.97 Da | 42.80 | 109.55 | 0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00083 | Sugar (and other) transporter | 33 | 83 | 9.9E-11 | IPR005828 |
| Pfam | PF07690 | Major Facilitator Superfamily | 202 | 336 | 1.7E-9 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 27 | 341 | 2.09E-35 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 13 | 345 | 2.8E-50 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 1 | 336 | 11.909193 | IPR020846 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 212 | 227 | - | IPR005829 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13050.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_040985776.1 | organic cation/carnitine transporter 7 isoform X2 [Juglans microcarpa x Juglans regia] | 0 |
| Q940M4 | Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J5BFQ7 | MFS domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_022660 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology