Basic Information
Locus ID:
gene_3187
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 43100403 | 43107682 | - | gene_3187 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.70 | 25,195.56 Da | 54.02 | 71.26 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 182 | 223 | 8.99837E-17 | - |
| Pfam | PF13639 | Ring finger domain | 182 | 223 | 3.0E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 182 | 229 | 5.3E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 145 | 229 | 4.1E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 183 | 223 | 3.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 183 | 223 | 11.722122 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 129 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010693485.1 | E3 ubiquitin ligase BIG BROTHER-related [Beta vulgaris subsp. vulgaris] | 0 |
| Q7L0R7 | RING finger protein 44 OS=Homo sapiens OX=9606 GN=RNF44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8YRF3 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology