Basic Information
Locus ID:
gene_3183
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 43063554 | 43084570 | - | gene_3183 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.65 | 75,482.01 Da | 44.22 | 85.43 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03140 | Plant protein of unknown function | 1 | 75 | 1.9E-21 | IPR004158 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 221 | 268 | 1.8E-4 | IPR018957 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 301 | 352 | 5.8E-11 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 363 | 415 | 9.0E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 216 | 300 | 2.78E-14 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 298 | 358 | 3.71E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 214 | 306 | 5.9E-14 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 348 | 596 | 6.5E-34 | - |
| SMART | SM00184 | ring_2 | 312 | 380 | 1.2 | IPR001841 |
| SMART | SM00184 | ring_2 | 221 | 270 | 0.16 | IPR001841 |
| SMART | SM00647 | ibrneu5 | 291 | 352 | 5.8E-10 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 217 | 437 | 28.471676 | IPR044066 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 634 | 659 | 8.941934 | IPR001876 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 221 | 268 | 10.128798 | IPR001841 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 638 | 657 | - | IPR001876 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_048496964.1 | probable E3 ubiquitin-protein ligase ARI8 isoform X4 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A2X000 | RBR-type E3 ubiquitin transferase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00112395pilonHSYRG00029 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology