Basic Information
Locus ID:
gene_3182
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 43033895 | 43049904 | - | gene_3182 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.01 | 139,781.91 Da | 54.17 | 73.63 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 164 | 214 | 2.53679E-12 | - |
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 804 | 854 | 2.05967E-13 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 874 | 935 | 1.9E-9 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 312 | 358 | 1.1E-5 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 233 | 295 | 8.2E-15 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 801 | 885 | 6.56E-14 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 307 | 360 | 2.12E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 234 | 302 | 2.56E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 874 | 942 | 1.2E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 947 | 1005 | 3.21E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 162 | 242 | 1.1E-13 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 931 | 1182 | 6.0E-40 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 291 | 545 | 1.8E-35 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 798 | 886 | 1.7E-14 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 158 | 244 | 2.3E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 893 | 963 | 1.8 | IPR001841 |
| SMART | SM00184 | ring_2 | 164 | 212 | 4.3 | IPR001841 |
| SMART | SM00184 | ring_2 | 804 | 844 | 0.62 | IPR001841 |
| SMART | SM00647 | ibrneu5 | 873 | 935 | 3.2E-11 | IPR002867 |
| SMART | SM00184 | ring_2 | 253 | 323 | 4.3 | IPR001841 |
| SMART | SM00647 | ibrneu5 | 299 | 360 | 0.17 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 233 | 295 | 2.6E-16 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 804 | 850 | 9.184606 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 160 | 367 | 32.596321 | IPR044066 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 800 | 1010 | 31.977835 | IPR044066 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 612 | 630 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1186 | 1209 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 554 | 592 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 609 | 630 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 566 | 592 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1191 | 1209 | - | - |
| Coils | Coil | Coil | 1116 | 1136 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_010693494.2 | probable E3 ubiquitin-protein ligase ARI8 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1R3IA96 | RBR-type E3 ubiquitin transferase OS=Corchorus olitorius OX=93759 GN=COLO4_24399 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology