Basic Information
Locus ID:
gene_3181
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 43027532 | 43032929 | - | gene_3181 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.74 | 65,794.51 Da | 48.93 | 76.86 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 133 | 183 | 5.69931E-15 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 202 | 264 | 6.1E-13 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 129 | 215 | 1.01E-14 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 276 | 329 | 6.62E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 203 | 271 | 1.5E-11 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 260 | 513 | 1.8E-39 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 127 | 216 | 3.2E-16 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 202 | 264 | 1.7E-16 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 129 | 340 | 34.157455 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 133 | 179 | 9.464913 | IPR001841 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 251 | 264 | 8.696716 | IPR001878 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_006428711.2 | probable E3 ubiquitin-protein ligase ARI8 [Citrus clementina] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9ANZ0 | RBR-type E3 ubiquitin transferase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology