Basic Information
Locus ID:
gene_3174
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 42809353 | 42818587 | - | gene_3174 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.53 | 48,047.98 Da | 32.21 | 73.47 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18345 | Zinc finger domain | 123 | 141 | 1.2E-7 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 151 | 187 | 7.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 313 | 347 | 0.01 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 277 | 308 | 0.12 | IPR001680 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 117 | 142 | 2.09E-7 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 151 | 436 | 1.37E-46 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 240 | 443 | 9.1E-33 | IPR015943 |
| Gene3D | G3DSA:4.10.1000.10 | - | 119 | 140 | 3.1E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 141 | 235 | 1.9E-11 | IPR015943 |
| SMART | SM00356 | c3hfinal6 | 119 | 143 | 4.8E-6 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 35 | 58 | 0.48 | IPR000571 |
| SMART | SM00320 | WD40_4 | 227 | 264 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 271 | 308 | 0.0032 | IPR001680 |
| SMART | SM00320 | WD40_4 | 311 | 348 | 4.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 352 | 395 | 6.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 148 | 187 | 4.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 398 | 435 | 7.1 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 278 | 311 | 9.467419 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 155 | 187 | 10.521959 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 155 | 196 | 14.084198 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 117 | 144 | 14.624088 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 34 | 59 | 10.023429 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 278 | 317 | 12.379869 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 295 | 309 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 335 | 349 | 1.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 295 | 309 | 1.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 174 | 188 | 1.2E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 34 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_010693461.2 | zinc finger CCCH domain-containing protein 48 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6P5TI16 | zinc finger CCCH domain-containing protein 48 OS=Prunus avium OX=42229 GN=LOC110767708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology