Basic Information
Locus ID:
gene_3133
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Chloride conductance regulatory protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 42126475 | 42135799 | - | gene_3133 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.66 | 43,401.93 Da | 54.97 | 79.33 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03517 | Regulator of volume decrease after cellular swelling | 51 | 179 | 7.6E-26 | IPR039924 |
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 290 | 384 | 2.0E-26 | IPR027486 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 288 | 385 | 2.75E-29 | IPR036838 |
| Gene3D | G3DSA:2.30.29.30 | - | 24 | 167 | 1.7E-37 | IPR011993 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 273 | 387 | 2.9E-47 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 290 | 384 | 1.3E-38 | IPR027486 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 287 | 385 | 1.3E-38 | IPR005729 |
| ProSitePatterns | PS00361 | Ribosomal protein S10 signature. | 312 | 327 | - | IPR018268 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 323 | 338 | 7.8E-13 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 345 | 359 | 7.8E-13 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 288 | 301 | 7.8E-13 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 286 | 385 | 18.488583 | IPR001848 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 120 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G62290.2 | nucleotide-sensitive chloride conductance regulator (ICln) family protein. | 0 |
| RefSeq | XP_021730225.1 | chloride conductance regulatory protein ICln-like [Chenopodium quinoa] | 0 |
| Q9LVA7 | Chloride conductance regulatory protein ICln OS=Arabidopsis thaliana OX=3702 GN=At5g62290 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J6FN56 | Ribosomal_S10 domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_000359 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology