Basic Information
Locus ID:
gene_3113
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 41679726 | 41684333 | - | gene_3113 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 112,732.43 Da | 33.98 | 98.82 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 39 | 88 | 1.1E-6 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 729 | 998 | 9.9E-48 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 142 | 163 | 1.8 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 97 | 417 | 1.57E-63 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 324 | 634 | 1.12E-55 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 729 | 1001 | 2.43E-71 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 39 | 209 | 7.6E-41 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 805 | 1013 | 1.2E-59 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 288 | 353 | 1.6E-17 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 711 | 804 | 1.0E-19 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 354 | 647 | 1.8E-78 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 210 | 287 | 1.4E-20 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 380 | 403 | 200.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 726 | 974 | 2.8E-29 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 307 | 331 | 2.8 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 571 | 594 | 210.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 355 | 379 | 30.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 235 | 259 | 65.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 139 | 163 | 11.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 726 | 1005 | 37.474194 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 141 | 164 | 7.088198 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 852 | 864 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 310 | 323 | 7.9E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 571 | 584 | 7.9E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G61480.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_021842183.1 | leucine-rich repeat receptor-like protein kinase TDR [Spinacia oleracea] | 0 |
| Q9FII5 | Leucine-rich repeat receptor-like protein kinase TDR OS=Arabidopsis thaliana OX=3702 GN=TDR PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RE89 | Protein kinase domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_076450 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology