Basic Information
Locus ID:
gene_308
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Transcriptional corepressor LEUNIG-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 5397200 | 5416402 | - | gene_308 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 135,343.05 Da | 45.27 | 79.59 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 400 | 658 | 5.2619E-54 | - |
| Pfam | PF00153 | Mitochondrial carrier protein | 1003 | 1067 | 6.9E-9 | IPR018108 |
| Pfam | PF00153 | Mitochondrial carrier protein | 784 | 860 | 1.5E-7 | IPR018108 |
| Pfam | PF00153 | Mitochondrial carrier protein | 887 | 965 | 3.8E-10 | IPR018108 |
| Pfam | PF00400 | WD domain, G-beta repeat | 435 | 470 | 1.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 397 | 428 | 5.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 559 | 594 | 0.0016 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 390 | 658 | 6.05E-56 | IPR036322 |
| SUPERFAMILY | SSF103506 | Mitochondrial carrier | 766 | 1062 | 6.67E-42 | IPR023395 |
| Gene3D | G3DSA:2.130.10.10 | - | 521 | 666 | 2.8E-23 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 346 | 520 | 8.0E-34 | IPR015943 |
| Gene3D | G3DSA:1.50.40.10 | Mitochondrial carrier domain | 772 | 1070 | 3.3E-46 | IPR023395 |
| SMART | SM00320 | WD40_4 | 389 | 428 | 1.8E-7 | IPR001680 |
| SMART | SM00667 | Lish | 9 | 41 | 0.0092 | IPR006594 |
| SMART | SM00320 | WD40_4 | 556 | 594 | 6.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 474 | 514 | 4.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 517 | 553 | 4.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 598 | 637 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 431 | 470 | 4.1E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 481 | 523 | 11.611251 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 438 | 470 | 14.184453 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 481 | 516 | 9.203785 | - |
| ProSiteProfiles | PS50920 | Solute carrier (Solcar) repeat profile. | 768 | 861 | 14.296473 | IPR018108 |
| ProSiteProfiles | PS50920 | Solute carrier (Solcar) repeat profile. | 871 | 980 | 13.781598 | IPR018108 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 438 | 470 | 11.73468 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 9 | 41 | 9.073652 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 396 | 437 | 11.912015 | IPR001680 |
| ProSiteProfiles | PS50920 | Solute carrier (Solcar) repeat profile. | 986 | 1072 | 14.811347 | IPR018108 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 396 | 431 | 9.388329 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 501 | 515 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 166 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 193 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 193 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32551.1 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain. LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. | 0 |
| RefSeq | XP_010686452.1 | transcriptional corepressor LEUNIG isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FUY2 | Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9RWK8 | LisH domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_026770 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology