Basic Information
Locus ID:
gene_3038
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 28515740 | 28573785 | + | gene_3038 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 99,807.77 Da | 44.85 | 87.36 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 194 | 329 | 3.16339E-52 | - |
| CDD | cd17920 | DEXHc_RecQ | 3 | 193 | 1.15026E-89 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 220 | 319 | 7.0E-19 | IPR001650 |
| Pfam | PF00570 | HRDC domain | 541 | 607 | 4.4E-12 | IPR002121 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 13 | 172 | 1.6E-20 | IPR011545 |
| Pfam | PF09382 | RQC domain | 399 | 495 | 4.5E-23 | IPR018982 |
| Pfam | PF14493 | Helix-turn-helix domain | 648 | 744 | 3.4E-18 | IPR029491 |
| Pfam | PF16124 | RecQ zinc-binding | 346 | 394 | 4.8E-10 | IPR032284 |
| SUPERFAMILY | SSF47819 | HRDC-like | 537 | 612 | 3.05E-14 | IPR010997 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 392 | 498 | 2.04E-23 | IPR036390 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 50 | 333 | 1.66E-55 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 535 | 617 | 1.5E-13 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 192 | 2.0E-71 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 396 | 521 | 1.2E-34 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 194 | 395 | 2.9E-52 | IPR027417 |
| SMART | SM00956 | RQC_2 | 401 | 505 | 1.7E-24 | IPR018982 |
| SMART | SM00490 | helicmild6 | 239 | 320 | 1.6E-28 | IPR001650 |
| SMART | SM00487 | ultradead3 | 7 | 204 | 1.3E-32 | IPR014001 |
| SMART | SM00341 | hrdc7 | 537 | 617 | 3.9E-4 | IPR002121 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 3 | 453 | 5.8E-145 | IPR004589 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 537 | 617 | 17.390629 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 210 | 373 | 19.959831 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 19 | 186 | 23.731485 | IPR014001 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.4 | - | 0 |
| RefSeq | XP_040993383.1 | ATP-dependent DNA helicase RecQ-like [Juglans microcarpa x Juglans regia] | 0 |
| P15043 | ATP-dependent DNA helicase RecQ OS=Escherichia coli (strain K12) OX=83333 GN=recQ PE=1 SV=5 | 0 | |
| TrEMBL | A0A5J5CA52 | ATP-dependent DNA helicase OS=Nyssa sinensis OX=561372 GN=F0562_002165 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology