Basic Information
Locus ID:
gene_3020
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 26280020 | 26296891 | + | gene_3020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 130,886.70 Da | 43.24 | 79.02 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 195 | 523 | 9.71679E-169 | - |
| CDD | cd00121 | MATH | 54 | 177 | 2.74768E-39 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 197 | 518 | 1.1E-46 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 884 | 1094 | 1.7E-56 | IPR029346 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 622 | 874 | 9.8E-77 | IPR024729 |
| Pfam | PF00917 | MATH domain | 59 | 179 | 7.2E-18 | IPR002083 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 50 | 185 | 1.01E-40 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 192 | 549 | 2.94E-97 | IPR038765 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 51 | 193 | 7.5E-51 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 682 | 799 | 4.1E-43 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 800 | 897 | 6.8E-28 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 194 | 522 | 6.3E-90 | - |
| SMART | SM00061 | math_3 | 54 | 158 | 1.8E-18 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 52 | 177 | 38.903259 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 197 | 521 | 40.904369 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 198 | 213 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 437 | 454 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
| Coils | Coil | Coil | 530 | 561 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.2 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_021720606.1 | ubiquitin carboxyl-terminal hydrolase 12 [Chenopodium quinoa] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LXJ5 | ubiquitinyl hydrolase 1 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology