Basic Information
Locus ID:
gene_2905
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 37901325 | 37915845 | - | gene_2905 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.00 | 66,945.76 Da | 57.03 | 62.67 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 142 | 192 | 1.64741E-15 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 290 | 338 | 7.5E-10 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 211 | 273 | 5.3E-15 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 292 | 340 | 1.12E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 137 | 220 | 3.58E-19 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 565 | 592 | 1.41E-5 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 211 | 280 | 5.77E-13 | - |
| Gene3D | G3DSA:2.30.30.380 | - | 562 | 592 | 4.3E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 136 | 225 | 2.9E-19 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 269 | 523 | 2.4E-85 | - |
| SMART | SM00647 | ibrneu5 | 211 | 273 | 6.0E-23 | IPR002867 |
| SMART | SM00547 | zf_4 | 567 | 591 | 3.6E-4 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 286 | 347 | 0.053 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 142 | 186 | 8.638745 | IPR001841 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 565 | 592 | 8.908056 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 138 | 351 | 51.799149 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 569 | 588 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 540 | 565 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31510.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_010671821.1 | probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q84RR0 | Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana OX=3702 GN=ARI7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9A7G8 | RBR-type E3 ubiquitin transferase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology