Basic Information
Locus ID:
gene_2904
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 37874284 | 37897209 | - | gene_2904 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.97 | 70,486.69 Da | 54.15 | 63.32 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 147 | 197 | 2.093E-13 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 287 | 334 | 9.5E-7 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 216 | 278 | 3.5E-15 | IPR002867 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 579 | 606 | 5.1E-6 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 216 | 285 | 5.89E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 142 | 225 | 6.67E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 297 | 353 | 3.71E-11 | - |
| Gene3D | G3DSA:2.30.30.380 | - | 577 | 618 | 7.7E-7 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 274 | 537 | 2.9E-73 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 141 | 227 | 3.5E-18 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 216 | 278 | 9.8E-23 | IPR002867 |
| SMART | SM00547 | zf_4 | 581 | 605 | 3.6E-4 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 143 | 364 | 45.507683 | IPR044066 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 579 | 608 | 8.603168 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 583 | 602 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 554 | 576 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_010671821.1 | probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9A7G8 | RBR-type E3 ubiquitin transferase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology