Basic Information
Locus ID:
gene_2896
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 37652059 | 37679623 | - | gene_2896 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 140,586.89 Da | 47.66 | 84.53 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14046 | STKc_EIF2AK4_GCN2_rpt2 | 424 | 735 | 2.4902E-140 | - |
| Pfam | PF13393 | Histidyl-tRNA synthetase | 884 | 1124 | 3.8E-15 | IPR041715 |
| Pfam | PF12745 | Anticodon binding domain of tRNAs | 1142 | 1239 | 2.0E-7 | IPR024435 |
| Pfam | PF00069 | Protein kinase domain | 431 | 736 | 4.6E-49 | IPR000719 |
| Pfam | PF05773 | RWD domain | 31 | 140 | 1.5E-17 | IPR006575 |
| SUPERFAMILY | SSF55681 | Class II aaRS and biotin synthetases | 800 | 1126 | 1.44E-29 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 427 | 784 | 1.33E-68 | IPR011009 |
| SUPERFAMILY | SSF54495 | UBC-like | 27 | 140 | 1.92E-22 | IPR016135 |
| SUPERFAMILY | SSF52954 | Class II aaRS ABD-related | 1141 | 1238 | 1.92E-10 | - |
| Gene3D | G3DSA:3.40.50.800 | - | 1138 | 1237 | 2.9E-18 | IPR036621 |
| Gene3D | G3DSA:3.30.930.10 | Bira Bifunctional Protein; Domain 2 | 795 | 1130 | 1.6E-60 | - |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 22 | 148 | 1.0E-28 | IPR016135 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 419 | 549 | 3.1E-31 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 552 | 744 | 3.3E-46 | - |
| SMART | SM00591 | RWD2001b | 34 | 143 | 4.9E-24 | IPR006575 |
| ProSiteProfiles | PS50908 | RWD domain profile. | 34 | 143 | 21.893341 | IPR006575 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 431 | 737 | 42.590702 | IPR000719 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 588 | 600 | - | IPR008266 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 437 | 460 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 326 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 286 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| Coils | Coil | Coil | 985 | 1005 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59410.1 | protein kinase family protein. | 0 |
| RefSeq | XP_010672180.2 | eIF-2-alpha kinase GCN2 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LX30 | eIF-2-alpha kinase GCN2 OS=Arabidopsis thaliana OX=3702 GN=GCN2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9R8G8 | non-specific serine/threonine protein kinase OS=Spinacia oleracea OX=3562 GN=SOVF_101340 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27616 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2896 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah019387, Ah036333 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g057120 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15230, Sbi_jg56041 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26524 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006316 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl01738, Sgl01741, Sgl06900 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000013908, gene:ENSEOMG00000031252 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3AG0009870, CQ.Regalona.r1.3BG0010010 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30244140 |
| Apiaceae | Apium graveolens | 2 | Ag5G02837, AgUnG00530 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G012600, COCNU_02G012610 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708605 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.470.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G13837 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G59410.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005755m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g03730.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g073650.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1448 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1541 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g11000 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0137s00008.v1.0, Dusal.0137s00010.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g21560 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4251 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.187 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00025198 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G25713 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1401, BH09.1588, CH09.1708 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4AG0312470, gene-QOZ80_4AG0312480 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0177670.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_044846 |
| Poaceae | Oryza coarctata | 1 | Oco08G009280 |
| Poaceae | Oryza sativa | 2 | LOC_Os04g41510.1, LOC_Os04g41530.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G144600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302298, Pt_Chr0307175 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr25G009740, Chr30G009580 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G607000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG050550, gene_TRIDC2BG053750 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G349200.3, TraesCS2B02G367600.4 ... |
| Poaceae | Zea mays | 1 | Zm00001eb078800_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-5128, nbis-gene-58808 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21519 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1408, evm.TU.LG07.1475 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g06860 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1486 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1803 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20556 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2714 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.342 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002101 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15794 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12868 |
| Salicaceae | Populus euphratica | 1 | populus_peu22604 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132643742 |
| Solanaceae | Solanum chilense | 4 | SOLCI002746500, SOLCI002746700, SOLCI004340500 ... |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004566 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5319 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G1310, TC06G1313 |
| Zosteraceae | Zostera marina | 1 | Zosma04g02150.v3.1 |