Basic Information
Locus ID:
gene_2829
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box protein At5g07610-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 35678001 | 35693041 | - | gene_2829 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.60 | 59,980.71 Da | 42.63 | 80.44 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 38 | 71 | 5.6E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 39 | 72 | 2.22E-6 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 16 | 73 | 1.7E-5 | - |
| SMART | SM00256 | fbox_2 | 37 | 76 | 7.7E-4 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30790.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_049353425.1 | F-box protein At3g26010-like [Solanum verrucosum] | 0 |
| Q9SY20 | F-box protein At1g30790 OS=Arabidopsis thaliana OX=3702 GN=At1g30790 PE=2 SV=2 | 0 | |
| TrEMBL | M1AE66 | F-box protein OS=Solanum tuberosum OX=4113 GN=102599747 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 6 | gene_21714, gene_21715, gene_21720, gene_26506, gene_2829 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000042942 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000005l.131 |