Basic Information
Locus ID:
gene_2718
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 4418886 | 4420876 | + | gene_2718 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.66 | 49,202.46 Da | 55.64 | 72.07 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 318 | 357 | 2.2E-6 | IPR002893 |
| SUPERFAMILY | SSF81901 | HCP-like | 117 | 230 | 2.22E-12 | - |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 313 | 359 | 4.19E-9 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 300 | 363 | 6.0E-9 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 97 | 267 | 2.6E-17 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 315 | 357 | 10.945868 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 439 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 419 | 439 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 418 | - | - |
| Coils | Coil | Coil | 369 | 434 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_021976018.1 | F-box protein At1g67340 [Helianthus annuus] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251U2M4 | Putative F-box domain, Zinc finger, MYND-type, Tetratricopeptide-like helical domain protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr08g0207811 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology