Basic Information
Locus ID:
gene_2713
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Chitin recognition protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 31903123 | 31908998 | - | gene_2713 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.83 | 37,969.36 Da | 45.28 | 65.99 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00325 | chitinase_GH19 | 104 | 334 | 1.10718E-113 | - |
| CDD | cd06921 | ChtBD1_GH19_hevein | 29 | 67 | 1.25994E-17 | - |
| Pfam | PF00187 | Chitin recognition protein | 30 | 67 | 1.9E-13 | IPR001002 |
| Pfam | PF00182 | Chitinase class I | 103 | 334 | 1.2E-126 | IPR000726 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 30 | 78 | 1.57E-14 | IPR036861 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 100 | 341 | 6.47E-106 | IPR023346 |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 186 | 243 | 4.0E-117 | - |
| Gene3D | G3DSA:1.10.530.10 | - | 107 | 340 | 4.0E-117 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 28 | 69 | 7.7E-17 | IPR036861 |
| SMART | SM00270 | ChitinBD_3 | 30 | 67 | 3.3E-16 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 3 | 341 | 4.6E-123 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 28 | 69 | 11.020087 | IPR001002 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 247 | 257 | - | IPR000726 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 121 | 143 | - | IPR000726 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 40 | 59 | - | IPR018371 |
| PRINTS | PR00451 | Chitin-binding domain signature | 38 | 46 | 4.1E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 53 | 60 | 4.1E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 46 | 53 | 4.1E-6 | IPR001002 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 97 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_010941399.1 | chitinase 1 isoform X1 [Elaeis guineensis] | 0 |
| Q688M5 | Chitinase 9 OS=Oryza sativa subsp. japonica OX=39947 GN=Cht9 PE=2 SV=1 | 0 | |
| TrEMBL | Q6IVX4 | Basic chitinase 2-1 OS=Nepenthes khasiana OX=122310 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology