Basic Information
Locus ID:
gene_2707
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Endochitinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 31792875 | 31795446 | - | gene_2707 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 43,631.96 Da | 47.58 | 60.12 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00035 | ChtBD1 | 37 | 74 | 1.84913E-13 | - |
| CDD | cd00035 | ChtBD1 | 75 | 112 | 6.04708E-12 | - |
| CDD | cd00325 | chitinase_GH19 | 159 | 387 | 2.54845E-97 | - |
| Pfam | PF00187 | Chitin recognition protein | 37 | 74 | 3.3E-11 | IPR001002 |
| Pfam | PF00182 | Chitinase class I | 158 | 387 | 8.0E-111 | IPR000726 |
| Pfam | PF00187 | Chitin recognition protein | 75 | 111 | 3.0E-11 | IPR001002 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 74 | 122 | 1.01E-10 | IPR036861 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 154 | 394 | 1.38E-91 | IPR023346 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 37 | 76 | 1.2E-9 | IPR036861 |
| Gene3D | G3DSA:3.30.60.10 | - | 75 | 113 | 3.4E-12 | IPR036861 |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 241 | 296 | 3.4E-104 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 35 | 74 | 8.5E-13 | IPR036861 |
| Gene3D | G3DSA:1.10.530.10 | - | 162 | 393 | 3.4E-104 | - |
| SMART | SM00270 | ChitinBD_3 | 37 | 74 | 8.2E-14 | IPR001002 |
| SMART | SM00270 | ChitinBD_3 | 75 | 111 | 1.5E-12 | IPR001002 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 77 | 113 | 8.66317 | IPR001002 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 35 | 76 | 9.955994 | IPR001002 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 176 | 198 | - | IPR000726 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 47 | 66 | - | IPR018371 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 84 | 103 | - | IPR018371 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 300 | 310 | - | IPR000726 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 148 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 154 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_052156822.1 | chitinase 9 [Oryza glaberrima] | 0 |
| Q688M5 | Chitinase 9 OS=Oryza sativa subsp. japonica OX=39947 GN=Cht9 PE=2 SV=1 | 0 | |
| TrEMBL | Q6IVX4 | Basic chitinase 2-1 OS=Nepenthes khasiana OX=122310 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology