Basic Information
Locus ID:
gene_2685
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 30857702 | 30866351 | - | gene_2685 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 43,778.15 Da | 50.45 | 58.42 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 331 | 371 | 8.06227E-28 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 330 | 376 | 5.6E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 331 | 377 | 1.08E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 317 | 381 | 2.2E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 332 | 370 | 8.7E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 332 | 371 | 11.412309 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 49 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021851630.1 | probable E3 ubiquitin-protein ligase LUL3 [Spinacia oleracea] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P6QXD7 | RING-type E3 ubiquitin transferase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0418321 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology