Basic Information
Locus ID:
gene_26684
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 36866785 | 36878944 | + | gene_26684 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 204,151.67 Da | 48.72 | 82.90 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1480 | 1901 | 2.64368E-124 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1527 | 1906 | 6.8E-83 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 192 | 659 | 2.53E-40 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1473 | 1899 | 5.49E-96 | IPR035983 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1781 | 1904 | 2.7E-32 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 182 | 502 | 1.6E-51 | IPR011989 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1421 | 1669 | 1.9E-46 | - |
| SMART | SM00185 | arm_5 | 350 | 388 | 8.3 | IPR000225 |
| SMART | SM00185 | arm_5 | 224 | 265 | 94.0 | IPR000225 |
| SMART | SM00119 | hect_3 | 1491 | 1906 | 1.2E-80 | IPR000569 |
| SMART | SM00185 | arm_5 | 307 | 347 | 73.0 | IPR000225 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1504 | 1906 | 55.978832 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1085 | 1120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 668 | 684 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 974 | 1120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1059 | 1073 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 976 | 1026 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 668 | 724 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1145 | 1181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1288 | 1320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 696 | 724 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1140 | 1181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1553 | 1574 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_010690374.2 | E3 ubiquitin-protein ligase UPL3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R9A0 | HECT-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_097120 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology