Basic Information
Locus ID:
gene_26582
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 35119369 | 35121743 | + | gene_26582 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.20 | 63,587.00 Da | 56.29 | 82.95 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 195 | 251 | 6.0E-10 | IPR001841 |
| Pfam | PF12678 | RING-H2 zinc finger domain | 476 | 542 | 3.9E-8 | IPR024766 |
| SUPERFAMILY | SSF57850 | RING/U-box | 195 | 257 | 1.25E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 476 | 548 | 6.6E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 464 | 551 | 8.1E-15 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 184 | 264 | 1.9E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 477 | 541 | 3.2E-7 | IPR001841 |
| SMART | SM00184 | ring_2 | 196 | 250 | 9.7E-8 | IPR001841 |
| SMART | SM00744 | ringv_2 | 195 | 251 | 9.6E-4 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 477 | 542 | 11.869652 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 196 | 251 | 12.858103 | IPR001841 |
| Coils | Coil | Coil | 412 | 448 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19950.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021753711.1 | putative RING-H2 finger protein ATL71 [Chenopodium quinoa] | 0 |
| Q8LPN7 | E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M6G9 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_14053, gene_14055, gene_25948, gene_26582 |