Basic Information
Locus ID:
gene_26530
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 34395280 | 34405936 | + | gene_26530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.85 | 98,020.01 Da | 45.51 | 87.33 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00478 | IMP dehydrogenase / GMP reductase domain | 794 | 861 | 2.3E-18 | IPR001093 |
| Pfam | PF03478 | Protein of unknown function (DUF295) | 425 | 464 | 4.0E-5 | IPR005174 |
| SUPERFAMILY | SSF81383 | F-box domain | 80 | 118 | 2.75E-6 | IPR036047 |
| SUPERFAMILY | SSF51412 | Inosine monophosphate dehydrogenase (IMPDH) | 787 | 859 | 3.01E-14 | - |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 775 | 865 | 3.6E-23 | IPR013785 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 76 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G16350.1 | Aldolase-type TIM barrel family protein. | 0 |
| RefSeq | XP_021867410.1 | F-box protein At2g17036-like [Spinacia oleracea] | 0 |
| Q9SA34 | Inosine-5'-monophosphate dehydrogenase 2 OS=Arabidopsis thaliana OX=3702 GN=At1g16350 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9Q892 | DUF295 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_215850 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_16244, gene_21745, gene_21763, gene_26530 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah008814, Ah008815, Ah008816, Ah008817 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g076820, BVRB_9g224050 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg50516 |
| Amaranthaceae | Suaeda glauca | 12 | Sgl23194, Sgl23396, Sgl23397, Sgl23398, Sgl28512, Sgl28513 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.3AG0013410, CQ.Regalona.r1.3AG0025460 ... |
| Portulacaceae | Portulaca oleracea | 10 | evm.TU.LG02.1509, evm.TU.LG02.1510, evm.TU.LG02.1512 ... |