halophFGD

Basic Information

Locus ID: gene_26506

Species & Taxonomic ID: Mesembryanthemum crystallinum & 3544

Genome Assembly: Koichi Toyokura Assembly

Description: F-box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Super-Scaffold_5_Chr_4	34054116	34055426	+	gene_26506

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.82	47,481.21 Da	50.09	79.58	-0.42

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	38	70	7.4E-7	IPR001810
SUPERFAMILY	SSF81383	F-box domain	39	74	1.57E-7	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	37	71	1.6E-5	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	25	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_016546044.1	F-box protein At5g49610-like [Capsicum annuum]	0
TrEMBL	A0A1U8EQ88	F-box protein At5g49610-like OS=Capsicum annuum OX=4072 GN=LOC107846084 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	6	gene_21714, gene_21715, gene_21720, gene_26506, gene_2829 ... gene_2833
Amaranthaceae	Chenopodium album	1	gene:ENSEOMG00000042942
Rhizophoraceae	Kandelia candel	1	add.evm.TU.utg000005l.131