Basic Information
Locus ID:
gene_26463
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 33409786 | 33418717 | + | gene_26463 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 25,301.26 Da | 53.48 | 53.88 | -0.86 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01426 | BAH domain | 22 | 139 | 3.5E-22 | IPR001025 |
| Pfam | PF00628 | PHD-finger | 144 | 192 | 5.8E-10 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 134 | 196 | 4.87E-18 | IPR011011 |
| Gene3D | G3DSA:2.30.30.490 | - | 2 | 138 | 1.2E-30 | IPR043151 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 139 | 206 | 2.0E-19 | IPR013083 |
| SMART | SM00439 | BAH_4 | 21 | 140 | 2.4E-40 | IPR001025 |
| SMART | SM00249 | PHD_3 | 144 | 191 | 4.8E-8 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 142 | 193 | 9.1607 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 21 | 140 | 23.04056 | IPR001025 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 145 | 190 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 219 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_052194328.1 | chromatin remodeling protein SHL-like isoform X2 [Diospyros lotus] | 0 |
| Q9FEN9 | Chromatin remodeling protein SHL OS=Arabidopsis thaliana OX=3702 GN=SHL PE=1 SV=1 | 0 | |
| TrEMBL | A0A8M8V0B3 | chromatin remodeling protein SHL isoform X2 OS=Sesamum indicum OX=4182 GN=LOC105169677 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology