Basic Information
Locus ID:
gene_26257
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 30036292 | 30038146 | + | gene_26257 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 61,871.55 Da | 53.87 | 99.04 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 100 | 111 | 1.8 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 430 | 451 | 0.4 | IPR001611 |
| Pfam | PF12937 | F-box-like | 15 | 51 | 1.0E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 15 | 77 | 1.09E-5 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 260 | 512 | 1.26E-27 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 59 | 249 | 9.42E-20 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 62 | 168 | 8.6E-8 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 169 | 251 | 8.8E-10 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 252 | 398 | 1.7E-11 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 399 | 537 | 5.2E-20 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 52 | 2.8E-8 | - |
| SMART | SM00367 | LRR_CC_2 | 429 | 454 | 0.049 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 210 | 235 | 120.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 185 | 209 | 78.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 98 | 123 | 500.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 273 | 298 | 560.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 455 | 480 | 14.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 124 | 148 | 480.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 354 | 380 | 140.0 | IPR006553 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 100 | 121 | 7.088198 | IPR001611 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_010691043.1 | F-box/LRR-repeat protein 14 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0K9QEN5 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_187630 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 19 | gene_21430, gene_21431, gene_21432, gene_21433, gene_21436 ... |
| Amaranthaceae | Atriplex hortensis | 6 | Ah010442, Ah010443, Ah010444, Ah010447, Ah010794, Ah024164 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_7g160670, BVRB_9g218820, BVRB_9g218830 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24776, Sbi_jg8641 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19963 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005111 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl56011, Sgl60655, Sgl61204 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000015098, gene:ENSEOMG00000019679 ... |
| Amaranthaceae | Chenopodium quinoa | 16 | CQ.Regalona.r1.1AG0013100, CQ.Regalona.r1.1BG0012960 ... |
| Apiaceae | Apium graveolens | 1 | Ag4G00092 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G24598 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G80630.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018340m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g35130.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g068330.2N |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.792 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG08.980, evm.TU.LG08.981, evm.TU.LG22.91 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.57916.3, evm.TU.57917.3 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6695 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16976 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12271, nbisL1-mrna-12272 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17128 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20704 |
| Salicaceae | Populus euphratica | 1 | populus_peu34905 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132631481, gene-LOC132631483, gene-LOC132633051 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI003651800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107013683 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.19304_chr07_+, STRG.19306_chr07_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC08G2295, TC08G2298 |