Basic Information
Locus ID:
gene_26247
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 29983153 | 29989424 | + | gene_26247 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.88 | 125,404.35 Da | 43.78 | 103.90 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52047 | RNI-like | 235 | 531 | 2.09E-23 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 668 | 1084 | 2.02E-27 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 78 | 215 | 2.51E-16 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 18 | 228 | 1.9E-21 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 563 | 869 | 5.4E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 229 | 554 | 1.1E-32 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 870 | 1103 | 2.7E-30 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 169 | 194 | 0.019 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 195 | 220 | 300.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 141 | 168 | 76.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 285 | 310 | 130.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 311 | 336 | 210.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 858 | 880 | 470.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 701 | 731 | 240.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 1028 | 1053 | 0.84 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 953 | 978 | 88.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 832 | 857 | 580.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 732 | 757 | 0.78 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 459 | 496 | 34.0 | IPR006553 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80630.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_010691043.1 | F-box/LRR-repeat protein 14 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0K9QEN5 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_187630 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 19 | gene_21430, gene_21431, gene_21432, gene_21433, gene_21436 ... |
| Amaranthaceae | Atriplex hortensis | 6 | Ah010442, Ah010443, Ah010444, Ah010447, Ah010794, Ah024164 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_7g160670, BVRB_9g218820, BVRB_9g218830 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24776, Sbi_jg8641 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19963 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005111 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl56011, Sgl60655, Sgl61204 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000015098, gene:ENSEOMG00000019679 ... |
| Amaranthaceae | Chenopodium quinoa | 16 | CQ.Regalona.r1.1AG0013100, CQ.Regalona.r1.1BG0012960 ... |
| Apiaceae | Apium graveolens | 1 | Ag4G00092 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G24598 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G80630.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018340m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g35130.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g068330.2N |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.792 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG08.980, evm.TU.LG08.981, evm.TU.LG22.91 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.57916.3, evm.TU.57917.3 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6695 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16976 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12271, nbisL1-mrna-12272 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17128 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20704 |
| Salicaceae | Populus euphratica | 1 | populus_peu34905 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132631481, gene-LOC132631483, gene-LOC132633051 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI003651800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107013683 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.19304_chr07_+, STRG.19306_chr07_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC08G2295, TC08G2298 |