halophFGD

Basic Information

Locus ID: gene_26246

Species & Taxonomic ID: Mesembryanthemum crystallinum & 3544

Genome Assembly: Koichi Toyokura Assembly

Description: F-box LRR-repeat protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Super-Scaffold_5_Chr_4	29977504	29979697	+	gene_26246

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.49	63,576.04 Da	48.12	109.61	-0.01

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13516	Leucine Rich repeat	177	199	0.058	IPR001611
Pfam	PF13516	Leucine Rich repeat	151	172	0.14	IPR001611
SUPERFAMILY	SSF52047	RNI-like	100	533	2.09E-28	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	244	368	1.4E-14	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	60	242	1.9E-24	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	375	546	5.9E-17	IPR032675
SMART	SM00367	LRR_CC_2	176	201	0.32	IPR006553
SMART	SM00367	LRR_CC_2	150	175	0.049	IPR006553
SMART	SM00367	LRR_CC_2	303	328	6.1	IPR006553
SMART	SM00367	LRR_CC_2	329	354	20.0	IPR006553
SMART	SM00367	LRR_CC_2	475	500	0.023	IPR006553
SMART	SM00367	LRR_CC_2	426	453	230.0	IPR006553

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K03360 (F-box and leucine-rich repeat protein GRR1)

Pathway:

ko04111 (Cell cycle - yeast) map04111 (Cell cycle - yeast) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_010691043.1	F-box/LRR-repeat protein 14 [Beta vulgaris subsp. vulgaris]	0
TrEMBL	V4S0B2	F-box domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10027319mg PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	19	gene_21430, gene_21431, gene_21432, gene_21433, gene_21436 ... gene_21437, gene_21453, gene_21454, gene_21456, gene_21457, gene_21459, gene_21460, gene_26246, gene_26247, gene_26248, gene_26251, gene_26255, gene_26256, gene_26257
Amaranthaceae	Atriplex hortensis	6	Ah010442, Ah010443, Ah010444, Ah010447, Ah010794, Ah024164
Amaranthaceae	Beta vulgaris	3	BVRB_7g160670, BVRB_9g218820, BVRB_9g218830
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg24776, Sbi_jg8641
Amaranthaceae	Salicornia europaea	1	Seu_jg19963
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00005111
Amaranthaceae	Suaeda glauca	3	Sgl56011, Sgl60655, Sgl61204
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000015098, gene:ENSEOMG00000019679 ... gene:ENSEOMG00000035959, gene:ENSEOMG00000049759, gene:ENSEOMG00000052680, gene:ENSEOMG00000053013
Amaranthaceae	Chenopodium quinoa	16	CQ.Regalona.r1.1AG0013100, CQ.Regalona.r1.1BG0012960 ... CQ.Regalona.r1.7BG0009310, CQ.Regalona.r1.7BG0009320, CQ.Regalona.r1.7BG0009330, CQ.Regalona.r1.7BG0009340, CQ.Regalona.r1.7BG0009360, CQ.Regalona.r1.7BG0009670, CQ.Regalona.r1.7BG0011330, CQ.Regalona.r1.9AG0008630, CQ.Regalona.r1.9AG0009240, CQ.Regalona.r1.9AG0015160, CQ.Regalona.r1.9AG0015230, CQ.Regalona.r1.9AG0015240, CQ.Regalona.r1.9AG0015250, CQ.Regalona.r1.9BG0013090
Apiaceae	Apium graveolens	1	Ag4G00092
Asteraceae	Flaveria trinervia	1	Ftri1G24598
Brassicaceae	Arabidopsis thaliana	1	AT1G80630.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10018340m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp5g35130.v2.2
Brassicaceae	Brassica nigra	1	BniB06g068330.2N
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.792
Portulacaceae	Portulaca oleracea	4	evm.TU.LG08.980, evm.TU.LG08.981, evm.TU.LG22.91 ... evm.TU.LG22.92
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.57916.3, evm.TU.57917.3
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-6695
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-16976
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-12271, nbisL1-mrna-12272
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-17128
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-20704
Salicaceae	Populus euphratica	1	populus_peu34905
Solanaceae	Lycium barbarum	4	gene-LOC132631481, gene-LOC132631483, gene-LOC132633051 ... gene-LOC132634305
Solanaceae	Solanum chilense	1	SOLCI003651800
Solanaceae	Solanum pennellii	1	gene-LOC107013683
Tamaricaceae	Reaumuria soongarica	2	STRG.19304_chr07_+, STRG.19306_chr07_-
Tamaricaceae	Tamarix chinensis	2	TC08G2295, TC08G2298