Basic Information
Locus ID:
gene_26187
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 29128447 | 29133695 | + | gene_26187 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 161,272.06 Da | 36.22 | 106.26 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 253 | 539 | 7.20738E-98 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1181 | 1401 | 1.12345E-121 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 565 | 765 | 2.42484E-108 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 863 | 1158 | 4.39969E-96 | IPR044726 |
| Pfam | PF00005 | ABC transporter | 1201 | 1348 | 1.1E-29 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 865 | 1108 | 1.1E-32 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 583 | 717 | 4.6E-21 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 256 | 498 | 8.0E-22 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 242 | 550 | 2.88E-33 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 561 | 787 | 2.04E-56 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1174 | 1409 | 1.16E-64 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 862 | 1163 | 5.36E-54 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 829 | 1164 | 3.7E-64 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 549 | 800 | 1.1E-73 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 240 | 547 | 1.4E-45 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1167 | 1420 | 2.3E-79 | IPR027417 |
| SMART | SM00382 | AAA_5 | 592 | 765 | 2.4E-16 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1209 | 1394 | 1.4E-10 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 565 | 788 | 22.555798 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1183 | 1417 | 17.133656 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 252 | 531 | 30.884441 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 865 | 1146 | 36.890965 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 690 | 704 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021736749.1 | ABC transporter C family member 3-like [Chenopodium quinoa] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LN56 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology