Basic Information
Locus ID:
gene_26186
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 29120099 | 29126130 | + | gene_26186 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 165,938.86 Da | 35.88 | 108.41 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 622 | 822 | 7.81404E-109 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 310 | 597 | 1.9194E-92 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 924 | 1218 | 1.77152E-95 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1241 | 1461 | 3.25365E-122 | - |
| Pfam | PF00005 | ABC transporter | 640 | 774 | 1.8E-20 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 926 | 1167 | 6.8E-33 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1260 | 1408 | 9.0E-31 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 320 | 576 | 9.7E-23 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1235 | 1469 | 4.47E-66 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 617 | 842 | 5.86E-57 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 65 | 602 | 6.15E-27 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 924 | 1225 | 4.45E-54 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1226 | 1479 | 1.2E-79 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 282 | 605 | 9.5E-45 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 606 | 859 | 6.8E-74 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 887 | 1223 | 1.0E-61 | IPR036640 |
| SMART | SM00382 | AAA_5 | 649 | 830 | 9.8E-14 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1269 | 1454 | 7.6E-14 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1243 | 1477 | 18.700941 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 926 | 1206 | 39.149826 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 309 | 589 | 30.603033 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 622 | 845 | 22.589144 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 747 | 761 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 872 | 898 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 876 | 891 | - | - |
| Coils | Coil | Coil | 470 | 490 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021859169.1 | ABC transporter C family member 3-like [Spinacia oleracea] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LN56 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology