Basic Information
Locus ID:
gene_26174
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Acts as an adapter for the XPO1 CRM1-mediated export of the 60S ribosomal subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 28950237 | 28967892 | + | gene_26174 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.94 | 123,352.26 Da | 45.59 | 79.83 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00590 | RRM_SF | 917 | 991 | 0.00118395 | - |
| Pfam | PF01426 | BAH domain | 598 | 711 | 5.6E-12 | IPR001025 |
| Pfam | PF04981 | NMD3 family | 61 | 293 | 2.4E-54 | IPR007064 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 909 | 997 | 1.96E-6 | IPR035979 |
| Gene3D | G3DSA:2.30.30.490 | - | 562 | 723 | 1.4E-27 | IPR043151 |
| SMART | SM00439 | BAH_4 | 597 | 722 | 1.5E-5 | IPR001025 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 915 | 991 | 8.72287 | IPR000504 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 597 | 721 | 15.902364 | IPR001025 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 457 | 486 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 812 | 836 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 812 | 827 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G03820.1 | nonsense-mediated mRNA decay NMD3 family protein. | 0 |
| RefSeq | XP_021837419.1 | 60S ribosomal export protein NMD3-like [Spinacia oleracea] | 0 |
| Q55BF2 | 60S ribosomal export protein NMD3 OS=Dictyostelium discoideum OX=44689 GN=nmd3 PE=3 SV=1 | 0 | |
| TrEMBL | A0A484L2P4 | 60S ribosomal export protein NMD3 OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS12346 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10293, jg33899 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_26174, gene_7044 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah023006, Ah023008, Ah027932, Ah028116 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_7g174740, BVRB_8g183440 |
| Amaranthaceae | Salicornia bigelovii | 8 | Sbi_jg1860, Sbi_jg30013, Sbi_jg30014, Sbi_jg34662 ... |
| Amaranthaceae | Salicornia europaea | 5 | Seu_jg18447, Seu_jg2897, Seu_jg2898, Seu_jg5919, Seu_jg8839 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00000441, GOSA_00003112, GOSA_00011361 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl02860, Sgl07977, Sgl11075, Sgl16488, Sgl46356, Sgl51069 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000007661, gene:ENSEOMG00000038127 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.2BG0024830, CQ.Regalona.r1.4AG0011770 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30190940 |
| Apiaceae | Apium graveolens | 4 | Ag4G02091, Ag6G01828, Ag9G00672, Ag9G01371 |
| Arecaceae | Cocos nucifera | 4 | COCNU_07G003200, COCNU_10G002710, contig69181369G000010 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103695621, gene-LOC103698178, gene-LOC103711789 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G09151 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G03820.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10019828m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g21090.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g043410.2N, BniB08g055730.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq09G1313, Ceq09G1314 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G1748, Cgl09G1403 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g08590 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0360s00009.v1.0, Dusal.0360s00010.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g04510 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.519, evm.TU.LG03.1987 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00012271, Pov_00014191 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G08263, Lb2G13237 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.4568, BH01.1779, BH02.4622, CH02.4664 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0047150, gene-QOZ80_1BG0096980 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_012849, gene-QYE76_058254, gene-QYE76_067060 |
| Poaceae | Oryza coarctata | 2 | Oco19G010910, Oco20G010730 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g42320.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G276800, gene-BS78_03G407400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0503336 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G027060, Chr09G005910, Chr13G018970, Chr15G018170 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G334700 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1AG029150, gene_TRIDC1BG034610 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS1A02G192300.1.cds1, TraesCS1B02G207100.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb024450_P001, Zm00001eb390490_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-38125, nbis-gene-39257, nbis-gene-59262 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12977 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.313, evm.TU.LG12.1391, evm.TU.LG14.1152 ... |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc02g25470, gene.Posoc05g16470, gene.Posoc05g19990 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_3_RagTag.784, evm.TU.Scaffold_8_RagTag.130 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-10209, nbisL1-mrna-1176 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13100, nbisL1-mrna-17338 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-17743, nbisL1-mrna-6461, nbisL1-mrna-7658 ... |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000018l.363, add.evm.TU.utg000019l.313 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003827, Maker00012669 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-17949, nbisL1-mrna-18808, nbisL1-mrna-19413 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-11456, nbisL1-mrna-13219, nbisL1-mrna-21572 |
| Salicaceae | Populus euphratica | 3 | populus_peu09706, populus_peu24780, populus_peu24801 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132614403, gene-LOC132642668 |
| Solanaceae | Solanum chilense | 2 | SOLCI002175700, SOLCI006722300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023631 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2634 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G2264 |
| Zosteraceae | Zostera marina | 3 | Zosma01g03550.v3.1, Zosma02g22280.v3.1, Zosma03g24120.v3.1 |