Basic Information
Locus ID:
gene_26152
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 28514873 | 28526801 | + | gene_26152 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 106,957.32 Da | 35.44 | 90.15 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 17 | 297 | 3.73539E-68 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 91 | 127 | 7.6E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 133 | 171 | 1.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 220 | 256 | 6.2E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 177 | 215 | 5.0E-6 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 326 | 763 | 2.2E-164 | IPR006692 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 3 | 297 | 2.56E-78 | IPR036322 |
| SUPERFAMILY | SSF101898 | NHL repeat | 221 | 493 | 3.4E-20 | - |
| Gene3D | G3DSA:1.25.40.470 | - | 590 | 798 | 2.4E-85 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 11 | 300 | 4.5E-113 | IPR015943 |
| SMART | SM00320 | WD40_4 | 174 | 215 | 5.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 131 | 171 | 2.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 4 | 43 | 0.87 | IPR001680 |
| SMART | SM00320 | WD40_4 | 218 | 257 | 3.3E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 88 | 127 | 8.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 46 | 85 | 1.7 | IPR001680 |
| PIRSF | PIRSF005567 | Beta'-COP | 2 | 888 | 0.0 | IPR016453 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 225 | 256 | 12.710129 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 138 | 172 | 11.207411 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 95 | 127 | 12.74747 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 181 | 224 | 11.912015 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 181 | 218 | 8.887423 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 225 | 266 | 15.855363 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 95 | 127 | 10.601049 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 138 | 180 | 13.649761 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 11 | 52 | 8.603614 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 158 | 172 | 1.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 244 | 258 | 1.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 202 | 216 | 1.7E-6 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G52360.1 | Coatomer, beta' subunit. | 0 |
| RefSeq | XP_010691280.1 | coatomer subunit beta'-2 isoform X3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9C827 | Coatomer subunit beta'-2 OS=Arabidopsis thaliana OX=3702 GN=At1g52360 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8ZDE5 | Coatomer subunit beta' OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology