Basic Information
Locus ID:
gene_26151
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 28509390 | 28512782 | + | gene_26151 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 35,324.40 Da | 26.86 | 87.88 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 17 | 297 | 1.17608E-64 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 223 | 261 | 4.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 180 | 218 | 5.0E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 17 | 45 | 0.13 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 63 | 88 | 0.026 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 93 | 130 | 1.4E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 137 | 174 | 5.5E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 10 | 299 | 4.58E-72 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 13 | 303 | 3.4E-98 | IPR015943 |
| SMART | SM00320 | WD40_4 | 48 | 88 | 0.023 | IPR001680 |
| SMART | SM00320 | WD40_4 | 221 | 261 | 8.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 8 | 45 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 134 | 174 | 1.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 177 | 218 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 91 | 130 | 6.4E-9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 228 | 270 | 12.613797 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 98 | 130 | 13.248743 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 98 | 130 | 10.996502 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 141 | 183 | 14.05078 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 228 | 264 | 10.126507 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 184 | 227 | 11.912015 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 141 | 177 | 10.68014 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 184 | 221 | 9.441055 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 248 | 262 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 161 | 175 | 1.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 205 | 219 | 1.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 117 | 131 | 1.2E-6 | IPR020472 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79990.2 | structural molecules. | 0 |
| RefSeq | XP_021774170.1 | coatomer subunit beta'-3-like [Chenopodium quinoa] | 0 |
| Q9CAA0 | Coatomer subunit beta'-1 OS=Arabidopsis thaliana OX=3702 GN=At1g79990 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1R3G7W2 | WD_REPEATS_REGION domain-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_28026 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology