halophFGD

Basic Information

Locus ID: gene_26122

Species & Taxonomic ID: Mesembryanthemum crystallinum & 3544

Genome Assembly: Koichi Toyokura Assembly

Description: Protein NRT1 PTR FAMILY

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Super-Scaffold_5_Chr_4	28012159	28017478	+	gene_26122

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.50	63,437.64 Da	49.35	91.18	0.09

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd17416	MFS_NPF1_2	36	516	2.81005E-178	-
Pfam	PF00854	POT family	101	386	2.8E-46	IPR000109
Pfam	PF00854	POT family	403	482	1.1E-11	IPR000109
SUPERFAMILY	SSF103473	MFS general substrate transporter	36	514	3.53E-23	IPR036259
Gene3D	G3DSA:1.20.1250.20	MFS general substrate transporter like domains	384	525	3.8E-35	IPR036259
Gene3D	G3DSA:1.20.1250.20	MFS general substrate transporter like domains	3	383	4.7E-103	IPR036259
ProSitePatterns	PS01022	PTR2 family proton/oligopeptide symporters signature 1.	90	114	-	IPR018456
MobiDBLite	mobidb-lite	consensus disorder prediction	1	26	-	-

Gene Ontology

Biological Process:

GO:0006857 (oligopeptide transport) GO:0055085 (transmembrane transport)

Molecular Function:

GO:0022857 (transmembrane transporter activity)

Cellular Component:

GO:0016020 (membrane)

KEGG Pathway

KO Term:

K14638 (solute carrier family 15 (peptide/histidine transporter), member 3/4)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G52190.1	Major facilitator superfamily protein.
RefSeq	XP_010691376.1	protein NRT1/ PTR FAMILY 1.2 [Beta vulgaris subsp. vulgaris]
Swiss-Prot	Q9M817	Protein NRT1/ PTR FAMILY 1.2 OS=Arabidopsis thaliana OX=3702 GN=NPF1.2 PE=1 SV=1
TrEMBL	A0A7C8Z4C3	Protein NRT1/PTR FAMILY 1.2-like OS=Opuntia streptacantha OX=393608 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg18135, jg36725, jg4534, jg4535
Aizoaceae	Mesembryanthemum crystallinum	2	gene_13236, gene_26122
Amaranthaceae	Atriplex hortensis	9	Ah006097, Ah010871, Ah010872, Ah017560, Ah022731, Ah022732 ... Ah034956, Ah034957, Ah034958
Amaranthaceae	Beta vulgaris	5	BVRB_2g032110, BVRB_2g032120, BVRB_2g032160, BVRB_2g032180 ... BVRB_9g221330
Amaranthaceae	Salicornia bigelovii	12	Sbi_jg11376, Sbi_jg20967, Sbi_jg20970, Sbi_jg20973 ... Sbi_jg20974, Sbi_jg22806, Sbi_jg22808, Sbi_jg22812, Sbi_jg22814, Sbi_jg40103, Sbi_jg46327, Sbi_jg50010
Amaranthaceae	Salicornia europaea	6	Seu_jg16678, Seu_jg16679, Seu_jg16681, Seu_jg16686 ... Seu_jg1671, Seu_jg20656
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00005322, GOSA_00011297, GOSA_00018211
Amaranthaceae	Suaeda glauca	6	Sgl46280, Sgl50992, Sgl55806, Sgl61013, Sgl62244, Sgl66791
Amaranthaceae	Chenopodium album	15	gene:ENSEOMG00000008416, gene:ENSEOMG00000012328 ... gene:ENSEOMG00000014931, gene:ENSEOMG00000015224, gene:ENSEOMG00000017459, gene:ENSEOMG00000018836, gene:ENSEOMG00000019804, gene:ENSEOMG00000030175, gene:ENSEOMG00000035709, gene:ENSEOMG00000040000, gene:ENSEOMG00000045907, gene:ENSEOMG00000047847, gene:ENSEOMG00000049732, gene:ENSEOMG00000050012, gene:ENSEOMG00000051427
Amaranthaceae	Chenopodium quinoa	9	CQ.Regalona.r1.1AG0001230, CQ.Regalona.r1.2AG0015780 ... CQ.Regalona.r1.2BG0017780, CQ.Regalona.r1.2BG0027300, CQ.Regalona.r1.4AG0010480, CQ.Regalona.r1.7BG0011590, CQ.Regalona.r1.8AG0002010, CQ.Regalona.r1.8BG0001980, CQ.Regalona.r1.9AG0013080
Anacardiaceae	Pistacia vera	4	pistato.v30124140, pistato.v30124950, pistato.v30253650 ... pistato.v30256770
Apiaceae	Apium graveolens	17	Ag1G01206, Ag4G00151, Ag4G00152, Ag5G00860, Ag5G01886 ... Ag6G01302, Ag6G01303, Ag7G00307, Ag7G00308, Ag7G00309, Ag7G00310, Ag8G00224, Ag9G01131, Ag9G01133, Ag9G01134, Ag9G01135, AgUnG00040
Arecaceae	Cocos nucifera	3	COCNU_06G005370, COCNU_14G003650, scaffold023260G000010
Arecaceae	Phoenix dactylifera	1	gene-LOC103709533
Asparagaceae	Asparagus officinalis	2	AsparagusV1_05.1916.V1.1, AsparagusV1_05.1917.V1.1
Asteraceae	Flaveria trinervia	7	Ftri10G16436, Ftri12G12696, Ftri12G24650, Ftri15G04492 ... Ftri18G20904, Ftri1G27918, FtriNA00819
Brassicaceae	Arabidopsis thaliana	3	AT1G52190.1, AT3G16180.1, AT5G11570.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10011325m.g.v1.0, Thhalv10020365m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g38740.v2.2, Sp3g14550.v2.2
Brassicaceae	Brassica nigra	3	BniB01g048730.2N, BniB04g057670.2N, BniB07g053550.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq04G2097, Ceq05G0311, Ceq06G1515
Casuarinaceae	Casuarina glauca	4	Cgl04G2290, Cgl06G1570, Cgl06G1571, Cgl06G1572
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-765
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.325, evm.TU.LG07.1110
Plantaginaceae	Plantago ovata	5	Pov_00003862, Pov_00013633, Pov_00013669, Pov_00022690 ... Pov_00025691
Plumbaginaceae	Limonium bicolor	2	Lb2G08494, Lb2G15472
Poaceae	Echinochloa crus-galli	6	AH02.3343, AH02.3344, BH02.3624, BH02.3625, CH02.3161 ... CH02.3164
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0034090, gene-QOZ80_1AG0034100 ... gene-QOZ80_1BG0084150, gene-QOZ80_1BG0084160
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.3HG0290590.1, HORVU.MOREX.r3.3HG0290630.1
Poaceae	Lolium multiflorum	2	gene-QYE76_055099, gene-QYE76_055101
Poaceae	Oryza coarctata	3	Oco01G020880, Oco02G021440, Oco02G021450
Poaceae	Oryza sativa	2	LOC_Os01g55600.1, LOC_Os01g55610.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G284300, gene-BS78_03G284400
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0500372, Pt_Chr0602705
Poaceae	Sporobolus alterniflorus	12	Chr01G010090, Chr02G008930, Chr02G008940, Chr02G008950 ... Chr02G008960, Chr03G016770, Chr05G024520, Chr05G024530, Chr05G024540, Chr05G024550, Chr05G024560, Chr12G026780
Poaceae	Thinopyrum elongatum	2	Tel3E01G491700, Tel3E01G492000
Poaceae	Triticum dicoccoides	5	gene_TRIDC3AG044030, gene_TRIDC3AG044040 ... gene_TRIDC3AG044050, gene_TRIDC3BG050000, gene_TRIDC3BG050010
Poaceae	Triticum aestivum	6	TraesCS3A02G304400.1, TraesCS3A02G304500.1 ... TraesCS3B02G332000.1, TraesCS3B02G332100.1, TraesCS3D02G297400.1, TraesCS3D02G297600.1
Poaceae	Zea mays	2	Zm00001eb152390_P001, Zm00001eb152400_P001
Poaceae	Zoysia japonica	3	nbis-gene-31142, nbis-gene-31143, nbis-gene-48769
Poaceae	Zoysia macrostachya	2	Zma_g11205, Zma_g11206
Portulacaceae	Portulaca oleracea	11	evm.TU.LG07.1675, evm.TU.LG07.670, evm.TU.LG07.671 ... evm.TU.LG07.674, evm.TU.LG07.675, evm.TU.LG08.1649, evm.TU.LG15.1542, evm.TU.LG15.267, evm.TU.LG15.268, evm.TU.LG15.271, evm.TU.LG22.541
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_10_RagTag.436
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-13100, nbisL1-mrna-13713, nbisL1-mrna-25644
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-6586
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-16829
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000033l.293
Rhizophoraceae	Kandelia obovata	1	Maker00014911
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-18357
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-8274
Salicaceae	Populus euphratica	13	populus_peu02673, populus_peu02720, populus_peu04894 ... populus_peu04895, populus_peu04896, populus_peu04897, populus_peu04898, populus_peu04899, populus_peu04900, populus_peu04902, populus_peu04903, populus_peu12761, populus_peu30153
Solanaceae	Lycium barbarum	13	gene-LOC132601903, gene-LOC132601904, gene-LOC132603689 ... gene-LOC132604207, gene-LOC132604208, gene-LOC132604210, gene-LOC132604211, gene-LOC132633379, gene-LOC132636803, gene-LOC132641398, gene-LOC132641399, gene-LOC132642690, gene-LOC132642691
Solanaceae	Solanum chilense	15	SOLCI000568900, SOLCI001760800, SOLCI002063400 ... SOLCI004066000, SOLCI004066100, SOLCI005619200, SOLCI007108800, SOLCI007241300, SOLCI007241400, SOLCI007241700, SOLCI007242000, SOLCI007242100, SOLCI007242200, SOLCI007242300, SOLCI007307200
Solanaceae	Solanum pennellii	18	gene-LOC107005491, gene-LOC107005915, gene-LOC107012272 ... gene-LOC107015096, gene-LOC107015114, gene-LOC107015115, gene-LOC107018238, gene-LOC107018446, gene-LOC107018741, gene-LOC107019137, gene-LOC107019153, gene-LOC107019160, gene-LOC107020017, gene-LOC107020329, gene-LOC107020330, gene-LOC107020331, gene-LOC107027059, gene-LOC114073829
Tamaricaceae	Reaumuria soongarica	2	STRG.19044_chr07_+, gene_3138
Tamaricaceae	Tamarix chinensis	1	TC08G1991