Basic Information
Locus ID:
gene_26095
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
PolyA polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 27478461 | 27484819 | + | gene_26095 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 76,967.95 Da | 49.66 | 80.10 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 59 | 214 | 3.74018E-29 | - |
| Pfam | PF04928 | Poly(A) polymerase central domain | 20 | 266 | 6.7E-66 | IPR007012 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 90 | 168 | 7.5E-7 | IPR002934 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 402 | 474 | 9.0E-7 | IPR007010 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 341 | 398 | 3.1E-9 | IPR007010 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 273 | 338 | 2.5E-23 | IPR007012 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 17 | 213 | 5.45E-52 | IPR043519 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 340 | 466 | 3.53E-34 | IPR011068 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 215 | 338 | 9.42E-48 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 340 | 456 | 3.1E-25 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 263 | 339 | 5.8E-26 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 52 | 208 | 4.3E-60 | IPR043519 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 472 | 526 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 588 | 649 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 474 | 488 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 533 | 552 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 495 | 518 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_021857653.1 | nuclear poly(A) polymerase 2-like [Spinacia oleracea] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9A5C5 | polynucleotide adenylyltransferase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology