Basic Information
Locus ID:
gene_26043
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 26400864 | 26407055 | + | gene_26043 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.52 | 70,692.48 Da | 45.13 | 88.87 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 210 | 470 | 5.9E-88 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 13 | 112 | 6.04E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 12 | 165 | 1.6E-12 | IPR011333 |
| SMART | SM00225 | BTB_4 | 25 | 131 | 0.0076 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 210 | 494 | 90.966927 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 25 | 95 | 9.123807 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 598 | 630 | - | - |
| Coils | Coil | Coil | 539 | 573 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G44820.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_021732836.1 | BTB/POZ domain-containing protein At3g44820-like [Chenopodium quinoa] | 0 |
| Q9FYC8 | BTB/POZ domain-containing protein At3g44820 OS=Arabidopsis thaliana OX=3702 GN=At3g44820 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C9CLR3 | NPH3 domain-containing protein OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg37576, jg8190, jg8193 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26043 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah011505 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g210820 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11911, Sbi_jg46856 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21151 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009480 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl80332, Sgl82798 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000018009, gene:ENSEOMG00000038908 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0010550, CQ.Regalona.r1.9BG0011900 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30057310, pistato.v30064720 |
| Apiaceae | Apium graveolens | 2 | Ag11G04067, Ag2G01024 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G001930 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723840 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.881.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G06748, Ftri17G04475 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G44820.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002437m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g16380.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g051360.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1712 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1714 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG09.777, evm.TU.LG09.778 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015870 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G19922 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1573, evm.TU.LG15.1642 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g23150 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.596, evm.TU.Scaffold_13_RagTag.447 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24128, nbisL1-mrna-30676 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2698 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22075 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.231 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015716 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-19040, nbisL1-mrna-4139 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-12072, nbisL1-mrna-22184 |
| Salicaceae | Populus euphratica | 3 | populus_peu08549, populus_peu08550, populus_peu36789 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600513 |
| Solanaceae | Solanum chilense | 1 | SOLCI002623700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005161 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8602 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1864 |
| Zosteraceae | Zostera marina | 1 | Zosma05g03550.v3.1 |