Basic Information
Locus ID:
gene_26026
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Acyl-CoA N-acyltransferase with RING FYVE PHD-type zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 26119344 | 26128473 | + | gene_26026 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.98 | 89,139.65 Da | 42.33 | 76.33 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 437 | 477 | 3.98297E-16 | - |
| Pfam | PF16135 | Tify domain binding domain | 185 | 240 | 1.5E-15 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 377 | 419 | 6.6E-14 | IPR032308 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 680 | 778 | 8.38E-7 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 521 | 580 | 4.8E-8 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 416 | 479 | 6.17E-16 | IPR011011 |
| Gene3D | G3DSA:3.40.630.30 | - | 627 | 791 | 1.6E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 423 | 507 | 1.3E-17 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 520 | 585 | 1.8E-11 | IPR013083 |
| SMART | SM00249 | PHD_3 | 437 | 478 | 1.9E-8 | IPR001965 |
| SMART | SM00249 | PHD_3 | 526 | 582 | 0.089 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 435 | 480 | 10.1397 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 438 | 477 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 300 | 336 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 300 | 334 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_021729860.1 | uncharacterized protein LOC110696835 [Chenopodium quinoa] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M6E4 | PHD-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology