Basic Information
Locus ID:
gene_26017
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 25993376 | 25998039 | + | gene_26017 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 44,381.08 Da | 47.43 | 86.39 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 160 | 203 | 5.64687E-20 | - |
| Pfam | PF13639 | Ring finger domain | 160 | 203 | 5.0E-13 | IPR001841 |
| Pfam | PF01277 | Oleosin | 281 | 388 | 2.8E-29 | IPR000136 |
| SUPERFAMILY | SSF57850 | RING/U-box | 155 | 207 | 8.48E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 120 | 207 | 7.0E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 161 | 202 | 6.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 161 | 203 | 13.049892 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 262 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 131 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27940.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021729854.1 | RING-H2 finger protein ATL57-like [Chenopodium quinoa] | 0 |
| A6MGW7 | Oleosin OS=Lilium longiflorum OX=4690 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9S0F8 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_008310 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology