Basic Information
Locus ID:
gene_25948
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 24684376 | 24685156 | + | gene_25948 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.29 | 26,228.12 Da | 42.20 | 82.70 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12678 | RING-H2 zinc finger domain | 175 | 230 | 2.0E-9 | IPR024766 |
| SUPERFAMILY | SSF57850 | RING/U-box | 175 | 230 | 3.85E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 131 | 230 | 5.9E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 176 | 230 | 4.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 176 | 230 | 11.66311 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_042975276.1 | E3 ubiquitin-protein ligase DZIP3 [Carya illinoinensis] | 0 |
| TrEMBL | A0A834H0B3 | RING-type domain-containing protein OS=Rhododendron simsii OX=118357 GN=RHSIM_Rhsim04G0080700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_14053, gene_14055, gene_25948, gene_26582 |