Basic Information
Locus ID:
gene_25916
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 23832126 | 23833466 | + | gene_25916 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.91 | 48,661.43 Da | 53.49 | 83.93 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 12 | 49 | 1.0E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 72 | 3.66E-15 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 11 | 50 | 2.1E-10 | - |
| SMART | SM00256 | fbox_2 | 13 | 54 | 2.0E-6 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 7 | 53 | 11.855471 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 371 | 395 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18330.1 | F-box family protein. | 0 |
| RefSeq | XP_048502344.1 | F-box/kelch-repeat protein At3g23880-like [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LS57 | Putative F-box protein At3g18330 OS=Arabidopsis thaliana OX=3702 GN=At3g18330 PE=4 SV=1 | 0 | |
| TrEMBL | A0A484KI55 | F-box domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS5370 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 5 | gene_11648, gene_11649, gene_12920, gene_25916, gene_9757 |