Basic Information
Locus ID:
gene_25615
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 10686612 | 10690154 | + | gene_25615 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 42,853.34 Da | 33.36 | 88.69 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 203 | 332 | 1.7E-9 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 41 | 123 | 6.0E-5 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 37 | 143 | 7.46E-16 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 190 | 333 | 2.88E-15 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 29 | 178 | 3.0E-10 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 195 | 333 | 1.0E-8 | IPR036378 |
| SMART | SM00554 | fasc_3 | 229 | 333 | 2.2E-9 | IPR000782 |
| SMART | SM00554 | fasc_3 | 66 | 181 | 1.8 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 30 | 182 | 10.933161 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 376 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12730.1 | FASCICLIN-like arabinogalactan 2. AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds | 0 |
| RefSeq | XP_010689281.2 | fasciclin-like arabinogalactan protein 2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SU13 | Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana OX=3702 GN=FLA2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9A1R3 | Gamma-glutamyltransferase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology