Basic Information
Locus ID:
gene_25413
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 2660088 | 2675259 | + | gene_25413 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.89 | 67,774.59 Da | 50.48 | 87.27 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 261 | 309 | 4.25712E-14 | - |
| Pfam | PF12906 | RING-variant domain | 261 | 308 | 1.7E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 257 | 312 | 6.43E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 246 | 316 | 1.9E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 260 | 309 | 7.0E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 253 | 315 | 18.530924 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 45 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_019107349.2 | uncharacterized protein LOC104902636 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0K9QGW0 | RING-CH-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_180040 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology