Basic Information
Locus ID:
gene_25389
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Disease resistance protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 1563236 | 1575738 | + | gene_25389 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.84 | 144,816.13 Da | 39.92 | 105.21 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00931 | NB-ARC domain | 144 | 384 | 2.6E-29 | IPR002182 |
| SUPERFAMILY | SSF52058 | L domain-like | 525 | 1123 | 8.39E-25 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 755 | 927 | 1.6E-6 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 144 | 383 | 2.99E-29 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 487 | 736 | 2.7E-20 | IPR032675 |
| Gene3D | G3DSA:1.10.8.430 | - | 309 | 390 | 1.6E-8 | IPR042197 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 937 | 1023 | 5.5E-6 | IPR032675 |
| Gene3D | G3DSA:3.40.50.300 | - | 127 | 298 | 1.1E-17 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1046 | 1186 | 5.3E-6 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 831 | 936 | 2.2E-8 | IPR032675 |
| PRINTS | PR00364 | Disease resistance protein signature | 158 | 173 | 1.4E-15 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 348 | 362 | 1.4E-15 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 249 | 263 | 1.4E-15 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 640 | 656 | 1.4E-15 | - |
| Coils | Coil | Coil | 235 | 255 | - | - |
| Coils | Coil | Coil | 28 | 62 | - | - |
| Coils | Coil | Coil | 98 | 118 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27190.1 | NB-ARC domain-containing disease resistance protein. | 0 |
| RefSeq | XP_034926486.1 | probable disease resistance protein At4g27220 isoform X3 [Populus alba] | 0 |
| Q9T048 | Disease resistance protein At4g27190 OS=Arabidopsis thaliana OX=3702 GN=At4g27190 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2J6LYU7 | AAA domain-containing protein OS=Lactuca sativa OX=4236 GN=LSAT_0X10760 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology