Basic Information
Locus ID:
gene_25383
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Disease resistance protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_5_Chr_4 | 1436689 | 1467978 | + | gene_25383 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.50 | 146,323.52 Da | 42.67 | 104.25 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00931 | NB-ARC domain | 128 | 352 | 9.7E-22 | IPR002182 |
| SUPERFAMILY | SSF52058 | L domain-like | 931 | 1190 | 3.89E-16 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 126 | 411 | 3.94E-25 | IPR027417 |
| SUPERFAMILY | SSF52058 | L domain-like | 515 | 1031 | 6.8E-21 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 917 | 1204 | 9.7E-16 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 515 | 912 | 2.9E-26 | IPR032675 |
| Gene3D | G3DSA:3.40.50.300 | - | 111 | 297 | 2.2E-17 | IPR027417 |
| PRINTS | PR00364 | Disease resistance protein signature | 633 | 649 | 4.0E-15 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 336 | 350 | 4.0E-15 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 144 | 159 | 4.0E-15 | - |
| Coils | Coil | Coil | 1280 | 1302 | - | - |
| Coils | Coil | Coil | 1219 | 1246 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63020.1 | Disease resistance protein (CC-NBS-LRR class) family. | 0 |
| RefSeq | XP_028052767.1 | disease resistance protein At4g27190-like [Camellia sinensis] | 0 |
| Q8RXS5 | Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana OX=3702 GN=At5g63020 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7J7GKY2 | NB-ARC domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_022314 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology