Basic Information
Locus ID:
gene_25291
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 42877114 | 42888230 | + | gene_25291 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 87,687.76 Da | 49.55 | 66.10 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 175 | 480 | 7.84363E-157 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 176 | 479 | 2.3E-46 | IPR001394 |
| Pfam | PF01753 | MYND finger | 82 | 119 | 3.0E-10 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 79 | 124 | 1.53E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 172 | 487 | 1.9E-89 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 68 | 125 | 2.8E-13 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 171 | 492 | 3.5E-93 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 82 | 119 | 12.121194 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 176 | 482 | 49.401779 | IPR028889 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 82 | 119 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 177 | 192 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 772 | 798 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 771 | 798 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 531 | 545 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 525 | 545 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_021762112.1 | ubiquitin carboxyl-terminal hydrolase 18-like [Chenopodium quinoa] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LXU6 | Ubiquitin carboxyl-terminal hydrolase 18-like OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology